Publications

Peer Reviewed Publications

G. A. Eken, Y. M. Huang, Y. X. Guo, and C. Ober, “Visualization of the pH Response through Autofluorescent Poly(styrene-alt-N-maleimide) Polyelectrolyte Brushes,” (in English), ACS Appl. Polym. Mater., Article; Early Access p. 11, 2023, doi: https://doi.org/10.1021/acsapm.2c02066.

G. A. Eken, F. Kafer, C. Y. Yuan, I. Andrade, and C. K. Ober, “Synthesis of N-Substituted Maleimides and Poly(styrene-co-N-maleimide) Copolymers and Their Potential Application as Photoresists,” (in English), Macromol. Chem. Phys., Article vol. 224, no. 1, p. 5, Jan 2023, Art no. 2200256, doi: https://doi.org/10.1002/macp.202200256.

J. N. Han and S. J. Li, “De novo biosynthesis of berberine and halogenated benzylisoquinoline alkaloids in Saccharomyces cerevisiae,” (in English), Comm. Chem., Article vol. 6, no. 1, p. 10, Feb 2023, Art no. 27, doi: 10.1038/s42004-023-00821-9.

M. Heeney and M. H. Frank, “The mRNA mobileome: Challenges and opportunities for deciphering signals from the noise,” The Plant Cell, p. koad063, 2023, doi: https://doi.org/10.1093/plcell/koad063

R. Sanghvi, Kuo, J., Ravi, A. and Lal, A., “Towards Ultra-High Spatial Resolution Sensing of GHz Ultrasound Using Strain Modulation of Field Effect Transistors,” in 2023 IEEE 36th International Conference on Micro Electro Mechanical Systems (MEMS), 2023: IEEE, doi: https://doi.org/10.1109/MEMS49605.2023.10052433.

T. Wilson, Amir, D., Shrivastav, V., Weatherspoon, H. and Kleinberg, R., “Extending Optimal Oblivious Reconfigurable Networks to all N,” in Symposium on Algorithmic Principles of Computer Systems (APOCS) 2023: Society for Industrial and Applied Mathematics, pp. 1-16, doi: https://doi.org/10.1137/1.9781611977578.ch1.

S. Wong, C. C. Tamarit, and J. F. Martínez, “PUMICE: Processing-using-memory integration with a scalar pipeline for symbiotic execution,” in Design Automation Conference (DAC), 2023: Association for Computing Machinery (ACM)

Y. Wu, Liu, C., Gong, F. and Li, S. , “Discovering dynamic plant enzyme complexes in yeast for novel alkaloid pathway identification from a medicinal plant kratom,” bioRxiv, pp. 2023-01, 2023, doi: https://doi.org/10.1101/2023.01.16.524293.

Y. Wu, F. L. Gong, and S. Li, “Leveraging yeast to characterize plant biosynthetic gene clusters,” Current Opinion in Plant Biology vol. 71, p. 102314, 2023, doi: https://doi.org/10.1016/j.pbi.2022.102314

Y. A. Wu, F. L. Gong, and S. J. Li, “Leveraging yeast to characterize plant biosynthetic gene clusters,” (in English), Current Opinion in Plant Biology, Review vol. 71, p. 9, Feb 2023, Art no. 102314, doi: https://doi.org/10.1016/j.pbi.2022.102314.

Books and Book Chapters

J. D. Woodson, M. D. Lemke, D. Tano, and S. Rai, “Chloroplast Signals and Their Effect on Nuclear Stress Gene Regulation, Cell Death, and Cellular Degradation Pathways,” in Nucleic Acids and Molecular Biology: Springer Submitted 2023.

Peer Reviewed Publications

F. L. Gong, J. N. Han, and S. J. Li, “MULTI-SCULPT: Multiplex Integration via Selective, CRISPR-Mediated, Ultralong Pathway Transformation in Yeast for Plant Natural Product Synthesis,” (in English), ACS Synth. Biol., Article; Early Access p. 12, 2022, doi: https://doi.org/10.1021/acssynbio.2c00135.

M. D. Lemke and J. D. Woodson, “Targeted for destruction: degradation of singlet oxygen-damaged chloroplasts,” (in English), Plant Signal. Behav., Article vol. 17, no. 1, p. 5, Dec 2022, Art no. 2084955, doi: https://doi.org/10.1080/15592324.2022.2084955.

C. Liu and S. J. Li, “Engineered biosynthesis of plant polyketides by type III polyketide synthases in microorganisms,” (in English), Front. Bioeng. Biotechnol., Review vol. 10, p. 19, Oct 2022, Art no. 1017190, doi: https://doi.org/10.3389/fbioe.2022.1017190.

J. A. Noble, Bielski, N.V., Liu, M.C.J., DeFalco, T.A., Stegmann, M., Nelson, A.D., McNamara, K., Sullivan, B., Dinh, K.K., Khuu, N. and Hancock, S., “Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization,” Plant Physiol., vol. 190, no. 4, pp. 2539-2556, 2022, doi: https://doi.org/10.1093/plphys/kiac444.

G. Rubambiza, F. Romero Galvan, R. Pavlick, H. Weatherspoon, and K. M. Gold, “Towards Cloud-Native, Machine Learning Based Detection of Crop Disease with Imaging Spectroscopy,” bioRxiv, pp. 2022-12, 2022, doi: https://doi.org/10.1101/2022.12.15.520316.

G. Rubambiza, P. Sengers, and H. Weatherspoon, “Seamless Visions, Seamful Realities: Anticipating Rural Infrastructural Fragility in Early Design of Digital Agriculture,” in ACM CHI Conference on Human Factors in Computing Systems (CHI), 2022: Association for Computing Machinery.

R. Sanghvi, J. Kuo, and A. Lal, “Liquid Layer Evolution Characterization using GHz Ultrasonic Pulses: Linear and Nonlinear Effects,” in Acoustofluidics 2022, 2022: Chemical and Biological Microsystems Society, pp. 126–127. [Online]. Available: https://acoustofluidics.net/archive/materials/Acoustofluidics_2022_Materials.pdf

Y. A. Wu, M. N. Chen, and S. J. Li, “De novo biosynthesis of diverse plant-derived styrylpyrones in Saccharomyces cerevisiae,” (in English), Metab. Eng. Commun., Article vol. 14, p. 12, Jun 2022, Art no. e00195, doi: https://doi.org/10.1016/j.mec.2022.e00195.

Non-Peer Reviewed Publications

The CROPPS Research Community (2022). Digital Biology to Enable Sustainable and Resilient Agriculture. The Bridge (NAE), 52, 30-34, Summer 2022. https://www.nae.edu/276545/Digital-Biology-to-Enable-Sustainable-and-Resilient-Agriculture 

Peer Reviewed Publications

D. Amir, T. Wilson, V. Shrivastav, H. Weatherspoon, R. Kleinberg, and R. Agarwal, “Optimal Oblivious Reconfigurable Networks,” in 54th Annual ACM SIGACT Symposium on Theory of Computing (STOC), Rome, ITALY, Jun 20-24 2022, NEW YORK: Assoc Computing Machinery, in Annual ACM Symposium on Theory of Computing, 2022, pp. 1339-1352, doi: https://doi.org/10.1145/3519935.3520020.